OpenMS Studio v2.4.0.3512
OpenDIA/PRM:
- Fixed issue with some compressed files failing to process.
OpenMS Studio v2.4.0.3511
OpenDIA/PRM:
- Speed up result loading times.
- Faster chromatogram extraction using sqMass.
- On-demand MS1 data extraction for precursor features. First extraction for each run will be slow (loading data).
General:
- Uses an embedded version of OpenMS, no local installation required.
OpenMS Studio v2.4.0.3510
Library Creation:
- Protein FDR filtering in the run results table (PIPE remains the same, i.e. PSM FDR).
- Show 'Re-pick Transitions' in run results table toolbar + bug fix that allows it to complete without crashing on save.
- Directly uses the Protein.Q, and PSM.Q values for FDR filtering, rather than recalculating the E-cutoff each time the table is filtered.
- Show q-values of proteins in run results table.
OpenDIA/PRM:
- Direct support for .osw and .chrom result reading. Chromatograms are now loaded using the pre-generated .chrom files over the on-demand extraction.
- Scientific notation for Q values in the transitions groups table.
- Fallback for a local pyprophet install if the embedded Python environment doesn't deploy it.
OpenClinProt
- Automatic bundle creation option for NextFlow from the Processing window.
General:
- Improved output window loading for very large logs.
- Better performance extracting integrated spectra on non-converted data files (ProteoWizard).
OpenMS Studio v2.4.0.3505
Library Creation:
- RT normalization based on key peptides (skipped for single files).
- Separate transition group exports for DIA and PRM.
OpenDIA/PRM:
- Display integrated MS1 spectrum for a selected transition group. Integrated MS2 spectrum is no longer extracted by default.
- Embedded view of the processing summary PDF geenrated by OpenSWATH.
- On-demand extraction of XICs using the converted MSStudio data format.
- Save OpenSWATH parameter file (.ini) in the result folder.
- Progress bar for internal OpenMS workflow tools.